
KAJO KEJI, South Sudan — Brig. Gen. Moses Lokujo stood in the ruins of Loopo, a strategic hilltop village in South Sudan’s lush southern Equatoria region. Less than two miles to the east, telephone poles poked over a green ridge, marking the outskirts of Kajo Keji, the seat of the county of the same name, where rebels under Lokujo’s command stared down government forces across a deserted marketplace, one of dozens of front lines in a grinding, three-year civil war that no one was winning.
It was late April, about two weeks after the South Sudanese army had attacked Loopo from the southwest, blasting through two lines of rebel defenses and wreaking havoc through the village. When the government forces eventually retreated to their base along the Ugandan border, the rebels moved back in to find the place destroyed. The homes were torched, the shops looted. A rocket-propelled grenade had cratered the wall of a primary school building, leaving behind sheaves of white ash that used to be books.
The army had attacked again, flanking the rebel positions around Kajo Keji just days before I arrived, but Lokujo’s men had repulsed them under heavy fire. “This is my location,” said Lokujo, a tall, well-built ethnic Kuku armed with a quick laugh and a black 9 mm pistol strapped to his hip. “The enemies will not come out and kill our civilians.”
The reality is that in Kajo Keji, as in much of war-torn South Sudan, there aren’t many civilians left to protect. Loopo was a ghost town except for Lokujo’s troops. The rest of Kajo Keji county, once home to perhaps hundreds of thousands of people, has emptied amid a civil war that has become one of the world’s worst, with government and rebel soldiers murdering and raping civilians for their ethnicity or suspected political affiliations. Since 2013, tens and possibly hundreds of thousands of people have been killed across South Sudan, though no one is really counting. Untold more have died of starvation and disease. Around a third of the population — estimated to be up to 12 million before the war — have fled their homes. In the last year alone, 1 million South Sudanese have flooded into Uganda, including three-quarters of Kajo Keji’s population, amid what the U.N. has described as a campaign of ethnic cleansing. It is the largest sudden exodus in Africa since the 1994 Rwandan genocide.

So Kajo Keji is now a land of soldiers. The army, largely consisting of a notorious ethnic Dinka militia called the Mathiang Anyoor, controls key border posts and towns along the road to the national capital of Juba, while the rebels roam the hilly countryside. In between are empty villages, burned huts, and silence. Dense bush overtakes abandoned fields. For three days, I traveled across the county from west to east and didn’t see another car. With a few exceptions, the only people I met were rebels.
“Bush is for guerrillas,” said Victor Moses, a rebel who joined Lokujo in February. And the guerrillas, Moses said, aren’t going anywhere. “We are ready to fight even for more than five years or 10 years or 20 years.”
Moses and the rest of Lokujo’s soldiers are part of the Sudan People’s Liberation Army-In Opposition, the country’s main rebel force. The IO, as it is called, was born in 2013 when the national army, called the SPLA, split following a massacre of ethnic Nuer citizens in Juba by Dinka troops loyal to President Salva Kiir. In subsequent days, Nuer army units defected across the country’s swampy northeast and, along with Nuer youth militia, sought to avenge the deaths of their brethren in Juba. Banding together under the leadership of former Vice President Riek Machar, himself a Nuer, they massacred Dinka civilians and others, plunging the country into a cycle of violence that continues today.
Machar remains at the helm of the IO, but he has been in South Africa since December 2016, after a brief unity government fell apart and he was chased into exile. Meanwhile, mechanized government troops have routed the Nuer rebel units in the northeast, where most of the fighting occurred from 2013 to 2016. As a result, the war has shifted south to the region that snakes along the porous borders with Uganda and the Democratic Republic of the Congo, making Equatorian troops a dominant group within the IO. Victor Moses is one of those troops. Born in Kajo Keji in the 1960s, he joined the SPLA in 1987, back when it was a rebel group fighting the Arab-dominated government of then-united Sudan. That war ended in 2005, setting the stage for South Sudan’s independence in 2011. Peace was good, he said, but the abuses by Kiir’s government and his allies in the army became too great. So this year, he deserted his post in Juba, came home to Kajo Keji, and went back to war. “If the government reforms, then well and good. If it doesn’t reform, then the government will reform through fire,” he said.
