It was the biggest one-day jump in the number of French cases since the outbreak began.
One 73-year-old victim was in the Oise department north of Paris where a cluster of cases has been reported, another a 64-year-old from the nearby Aisne department, the ministry said. Details of the day's third death have not been released. The health authorities have stressed that the majority of those so far affected in France have been elderly, with many suffering from background health problems.
Of those infected, the condition of 23 is causing serious concern. All are being treated in special emergency care facilities.
France on the brink of an epidemic
President Emmanuel Macron on Thursday met top researchers leading the efforts to fight an outbreak that has seen authorities close around 150 schools.
Government spokeswoman Sibeth Ndiaye said Wednesday that officials would probably have to raise the country's epidemic alert to the maximum of level three, potentially leading to travel restrictions and clampdowns on public activities.
"Slowing the spread will dampen the impact on the population when we go to level three, and limit the epidemic's peak," the health ministry said.
On Thursday, Paris metro operator RATP reported that a station agent had tested positive for the virus, and had worked for several days before being hospitalised.
A RATP union official said the woman had taken part in an evangelical rally last month in the eastern city of Mulhouse, where officials have said several other participants had come down with the disease.
Paris Marathon postponed
In related news, organisers have confirmed the postponement of the Paris Marathon from 5 April to 18 October because of the coronavirus outbreak.
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